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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3468205_3469526_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3468205 - 3469526
Intron Length:
1322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAC
U12 Branch Point Sequence:
GTCATCACAATT
Flanking Amino Acid:
IKGPVVGSIMINFVLFIGII
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.8
83.2
28.5
Major BPS
69.5
0.49
1
71.8
33.3
Major PPT
81.6
0.71
0.7
73.7
31.3
Minor 5ss
36.2
-1.6
2.7
42.6
38.5
Minor BPS
46
-0.2
1.8
62.38
41.7

Associated Gene:

Gene:
ADCYAP1R1
Ensembl Gene ID:
ENSAPLG00000009120
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041706
3445732 - 3581832
136101
ENSAPLT00000032738
3445732 - 3581832
136101
ENSAPLT00000009591
3445732 - 3581832
136101
ENSAPLT00000045110
3445732 - 3581832
136101