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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34683200_34689814_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34683200 - 34689814
Intron Length:
6615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTTGTAATT
Flanking Amino Acid:
WSQEKVTTVSDGKNTDYANF
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
85.1
25.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.2
0.9
0.7
85.3
28.7
Minor 5ss
35.1
-1.7
2.7
42.4
44.3
Minor BPS
58.8
0.35
2
78.3
39.3

Associated Gene:

Gene:
SKAP2
Ensembl Gene ID:
ENSAPLG00000020344
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030623
34636238 - 34710055
73818
ENSAPLT00000012135
34672043 - 34748485
76443
ENSAPLT00000042766
34671911 - 34719566
47656
ENSAPLT00000032284
34630380 - 34710055
79676