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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34689884_34708543_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34689884 - 34708543
Intron Length:
18660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTCTTC
5'SS Class:
major
3'SS Sequence:
ATGTGTTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATCCCTTCAGA
Flanking Amino Acid:
IDDSIYEELPEESASPKAEV
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1.1
66.2
40.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79.6
0.67
0.9
73.4
41.3
Minor 5ss
47.4
-0.3
3
68
43
Minor BPS
54.9
0.15
2.1
70.06
42

Associated Gene:

Gene:
SKAP2
Ensembl Gene ID:
ENSAPLG00000020344
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042766
34671911 - 34719566
47656
ENSAPLT00000032284
34630380 - 34710055
79676
ENSAPLT00000030623
34636238 - 34710055
73818
ENSAPLT00000012135
34672043 - 34748485
76443