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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3469597_3473550_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3469597 - 3473550
Intron Length:
3954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTATC
5'SS Class:
major
3'SS Sequence:
TTACTAACTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTTCATTACTA
Flanking Amino Acid:
AVLRLHFDDTGCWDMNDNTA
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.1
76.2
39.9
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
74.3
0.55
0.9
67.7
37.6
Minor 5ss
38.5
-1.3
3.1
45.5
42.9
Minor BPS
58.3
0.26
1.9
72.1
40.4

Associated Gene:

Gene:
ADCYAP1R1
Ensembl Gene ID:
ENSAPLG00000009120
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041706
3445732 - 3581832
136101
ENSAPLT00000032738
3445732 - 3581832
136101
ENSAPLT00000009591
3445732 - 3581832
136101
ENSAPLT00000045110
3445732 - 3581832
136101