About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34708646_34709005_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34708646 - 34709005
Intron Length:
360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCAG
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACCTTTTAAACT
Flanking Amino Acid:
WVQQVKFVIQDMESNTIPEE
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
68.8
43.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.8
0.6
0.9
72.9
36.6
Minor 5ss
37.2
-1.4
3
46.7
48.6
Minor BPS
56
0.27
1.7
68.73
43.1

Associated Gene:

Gene:
SKAP2
Ensembl Gene ID:
ENSAPLG00000020344
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042766
34671911 - 34719566
47656
ENSAPLT00000032284
34630380 - 34710055
79676
ENSAPLT00000030623
34636238 - 34710055
73818
ENSAPLT00000012135
34672043 - 34748485
76443