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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34709070_34709977_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34709070 - 34709977
Intron Length:
908

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGACTT
5'SS Class:
major
3'SS Sequence:
AAATATTTAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TAGTTATTAATA
Flanking Amino Acid:
ISAPDKRIYQFAAATPKEAE
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.2
67.6
43.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
61.2
0.25
1
55.8
43.3
Minor 5ss
32.9
-2
3.4
48.2
47.4
Minor BPS
62.4
0.39
1.6
69.23
37.2

Associated Gene:

Gene:
SKAP2
Ensembl Gene ID:
ENSAPLG00000020344
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030623
34636238 - 34710055
73818
ENSAPLT00000012135
34672043 - 34748485
76443
ENSAPLT00000042766
34671911 - 34719566
47656
ENSAPLT00000032284
34630380 - 34710055
79676