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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34710103_34718666_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
34710103 - 34718666
Intron Length:
8564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTATA
5'SS Class:
strong_major
3'SS Sequence:
TTATCTCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTATCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
89
24.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75
0.56
0.9
70.7
34.6
Minor 5ss
39.4
-1.2
2.8
51.5
45
Minor BPS
68.6
0.66
1.5
83.95
37.1

Associated Gene:

Gene:
SKAP2
Ensembl Gene ID:
ENSAPLG00000020344
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042766
34671911 - 34719566
47656
ENSAPLT00000012135
34672043 - 34748485
76443