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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34719567_34747495_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
34719567 - 34747495
Intron Length:
27929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAATGTCT
5'SS Class:
major
3'SS Sequence:
ATTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTACAGAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
65.9
40.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
91.3
0.93
0.7
89.4
26.5
Minor 5ss
39
-1.2
3.3
48.7
47
Minor BPS
57.1
0.3
1.9
82.12
38.2

Associated Gene:

Gene:
SKAP2
Ensembl Gene ID:
ENSAPLG00000020344
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012135
34672043 - 34748485
76443