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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34774832_34776647_R

Intron Information:

Intron Rank:
129254
Intron Class:
major
Intron Phase:
Intron Coordinates:
34774832 - 34776647
Intron Length:
1816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.5
39.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.6
0.89
0.7
85.3
29.1
Minor 5ss
31
-2.2
3.3
39.7
46.3
Minor BPS
63.6
0.51
1.5
78.46
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016743
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024450
34774806 - 34787243
12438