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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34776755_34786971_R

Intron Information:

Intron Rank:
129255
Intron Class:
major
Intron Phase:
Intron Coordinates:
34776755 - 34786971
Intron Length:
10217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGCG
5'SS Class:
major
3'SS Sequence:
TTTTCTTATTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTCTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
62.3
41.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85.4
0.8
0.7
85.8
27.5
Minor 5ss
28.5
-2.5
3.6
38.6
46.6
Minor BPS
76.2
0.9
1.4
91.47
32.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016743
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024450
34774806 - 34787243
12438