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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3479356_3479785_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3479356 - 3479785
Intron Length:
430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
CCTTCATCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TATTCCTTCATC
Flanking Amino Acid:
TTAMVILCRFRKLHCTRNFI
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
74
38.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
76.5
0.6
0.8
74
29.9
Minor 5ss
28.1
-2.5
2.7
31.4
42.8
Minor BPS
71.4
0.65
1.7
79.47
35.9

Associated Gene:

Gene:
ADCYAP1R1
Ensembl Gene ID:
ENSAPLG00000009120
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041706
3445732 - 3581832
136101
ENSAPLT00000032738
3445732 - 3581832
136101
ENSAPLT00000009591
3445732 - 3581832
136101
ENSAPLT00000045110
3445732 - 3581832
136101