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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3479884_3480438_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3479884 - 3480438
Intron Length:
555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
AACCATTTAACC
Flanking Amino Acid:
DENETESDNQDYYYLSVKAL
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
80.6
33.8
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
79.4
0.66
1
79.3
33
Minor 5ss
32.6
-2
3.4
48
47.7
Minor BPS
55.7
0.16
1.5
60.55
38.2

Associated Gene:

Gene:
ADCYAP1R1
Ensembl Gene ID:
ENSAPLG00000009120
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041706
3445732 - 3581832
136101
ENSAPLT00000032738
3445732 - 3581832
136101
ENSAPLT00000009591
3445732 - 3581832
136101
ENSAPLT00000045110
3445732 - 3581832
136101