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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3482990_3496780_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3482990 - 3496780
Intron Length:
13791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAAGTAT
5'SS Class:
major
3'SS Sequence:
CTTCTAATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CTTCTTCTAATT
Flanking Amino Acid:
ALFRFIISEDGWEVDNLGQA
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
69.3
37.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
81.4
0.71
0.8
78.2
33.8
Minor 5ss
38.2
-1.3
3.5
55.6
48.7
Minor BPS
54.7
0.23
1.7
73.15
38.4

Associated Gene:

Gene:
ADCYAP1R1
Ensembl Gene ID:
ENSAPLG00000009120
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032738
3445732 - 3581832
136101
ENSAPLT00000009591
3445732 - 3581832
136101
ENSAPLT00000045110
3445732 - 3581832
136101
ENSAPLT00000041706
3445732 - 3581832
136101