About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34845736_34846668_R

Intron Information:

Intron Rank:
144894
Intron Class:
major
Intron Phase:
Intron Coordinates:
34845736 - 34846668
Intron Length:
933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGGAAT
5'SS Class:
major
3'SS Sequence:
TTCCTGTCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
GCCATTTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
73.1
37.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
77
0.61
0.8
69.4
36.9
Minor 5ss
40.2
-1.1
3.2
53.5
45
Minor BPS
44.6
-0.3
1.7
53.42
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025341
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033045
34844952 - 34847037
2086