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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34859810_34860964_F

Intron Information:

Intron Rank:
144158
Intron Class:
major
Intron Phase:
Intron Coordinates:
34859810 - 34860964
Intron Length:
1155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGATATT
5'SS Class:
major
3'SS Sequence:
TTATTTCTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTCTGTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
77.9
36.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.3
0.8
0.7
81.7
30
Minor 5ss
41.3
-1
3.3
59.1
40
Minor BPS
52
0.14
2.2
77.64
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027700
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046008
34858651 - 34862128
3478