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Intron Name: Anas_platyrhynchos_platyrhynchos_2_34879383_34880825_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34879383 - 34880825

Intron Length:

1443

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGAACC

5'SS Class:

strong_major

3'SS Sequence:

GTGATTTGCATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTGAT

U12 Branch Point Sequence:

CTTTGTGTGATT

Flanking Amino Acid:

TKQKNSSSSSGESCAGDKSP

Intron Amino Acid Position:

159

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

0.9

74.3

34.2

Major BPS

82.5

0.81

0.8

71.4

36.6

Major PPT

62.2

0.27

57.1

43.2

Minor 5ss

40.8

-1

2.8

43.8

Minor BPS

-0.2

2.4

69.68

42.6

Associated Gene:

Gene:

HOXA3

Ensembl Gene ID:

ENSAPLG00000022676

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021445

34877843 - 34896453

18611