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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34881418_34892586_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
34881418 - 34892586
Intron Length:
11169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CCCCACACCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
ATTTCTTCACCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
77.5
0.68
1
79.6
33
Major PPT
60.9
0.25
0.9
50.3
32.3
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
58.9
0.26
1.8
72.85
38.3

Associated Gene:

Gene:
HOXA3
Ensembl Gene ID:
ENSAPLG00000022676
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021445
34877843 - 34896453
18611