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Intron Name: Anas_platyrhynchos_platyrhynchos_2_34892671_34896260_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

34892671 - 34896260

Intron Length:

3590

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATTTT

5'SS Class:

strong_major

3'SS Sequence:

TGCTTGTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCGTTAA

U12 Branch Point Sequence:

TCCCCGTTAAGG

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.7

0.94

0.8

90.3

22.3

Major BPS

48.9

-0

1.2

39.7

Major PPT

82.9

0.74

0.9

80.2

37.3

Minor 5ss

45.5

-0.5

66.9

44.4

Minor BPS

45.8

-0.4

2.4

52.05

48.3

Associated Gene:

Gene:

HOXA3

Ensembl Gene ID:

ENSAPLG00000022676

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021445

34877843 - 34896453

18611