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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34912113_34913085_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34912113 - 34913085
Intron Length:
973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAGCAA
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
AGAATCTAAATC
Flanking Amino Acid:
PWMRKLHISHDNIGGPEGKR
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
60.9
39.3
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
92.3
0.95
0.6
85.1
29.7
Minor 5ss
29.6
-2.3
3.3
34.7
43.6
Minor BPS
48.7
-0.1
1.6
54.74
37.2

Associated Gene:

Gene:
HOXA5
Ensembl Gene ID:
ENSAPLG00000022394
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026176
34911031 - 34913647
2617