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Intron Name: Anas_platyrhynchos_platyrhynchos_2_34915961_34917314_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34915961 - 34917314

Intron Length:

1354

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGGCAT

5'SS Class:

strong_major

3'SS Sequence:

TTTACTTCTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTTAC

U12 Branch Point Sequence:

TTGTCTTTACTT

Flanking Amino Acid:

PWMQRMNSCAGTVYGTHGRR

Intron Amino Acid Position:

146

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

71.3

40.1

Major BPS

0.6

65.6

41.1

Major PPT

86.2

0.81

0.7

80.5

31.4

Minor 5ss

32.6

-2

3.4

44.3

44.6

Minor BPS

69.1

0.68

1.6

83.09

39.1

Associated Gene:

Gene:

HOXA6

Ensembl Gene ID:

ENSAPLG00000011384

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011856

34915701 - 34917750

2050