Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34925011_34926118_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34925011 - 34926118

Intron Length:

1108

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGGGCA

5'SS Class:

major

3'SS Sequence:

TGCCTGCTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCCTAAC

U12 Branch Point Sequence:

TCCTGCCTAACT

Flanking Amino Acid:

FRIYPWMRSSGPDRKRGRQT

Intron Amino Acid Position:

126

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.4

0.69

66.7

39.1

Major BPS

54.3

0.11

1.2

57.5

37.5

Major PPT

76.7

0.6

0.9

72.8

37.5

Minor 5ss

28.1

-2.5

3.6

38.3

46.9

Minor BPS

55.4

0.25

2.1

76.28

46.2

Associated Gene:

Gene:

HOXA7

Ensembl Gene ID:

ENSAPLG00000011313

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011773

34924657 - 34926494

1838