About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_35007910_35009408_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35007910 - 35009408
Intron Length:
1499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCCAAC
5'SS Class:
major
3'SS Sequence:
GCTCCCCACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
GGCTCCCCACGC
Flanking Amino Acid:
TGSAEYQHSKGPCSEALAGS
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.2
63.4
43.1
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
64.9
0.34
0.9
58.2
32
Minor 5ss
44.1
-0.6
2.9
60.3
44.4
Minor BPS
38
-0.9
2.1
44.77
43

Associated Gene:

Gene:
EVX1
Ensembl Gene ID:
ENSAPLG00000020631
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038154
35007474 - 35011382
3909