About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_35009660_35010336_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35009660 - 35010336
Intron Length:
677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACACGCA
5'SS Class:
major
3'SS Sequence:
CCTCTCTCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGGTGAC
U12 Branch Point Sequence:
CTGCGGGTGACG
Flanking Amino Acid:
ALNLPETTIKVWFQNRRMKD
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
59.5
39.8
Major BPS
45.4
-0.2
1.4
34.5
43.7
Major PPT
72.3
0.5
0.9
68.8
31.7
Minor 5ss
34.9
-1.7
3.5
47.9
47.7
Minor BPS
33.6
-1.4
2.7
39.05
44.9

Associated Gene:

Gene:
EVX1
Ensembl Gene ID:
ENSAPLG00000020631
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038154
35007474 - 35011382
3909