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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_35108749_35109323_R

Intron Information:

Intron Rank:
143061
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
35108749 - 35109323
Intron Length:
575

Sequence Information:

Terminal Dinucleotides:
GT-GG
5'SS Sequence:
GAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTGG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
TGTATTTTAGAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
79.2
0.72
1
75
40
Major PPT
50.3
0.01
3.2
88.9
28.2
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
50.9
0.11
1.7
70.42
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024323
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039006
35108608 - 35109858
1251