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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_35199359_35202494_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35199359 - 35202494
Intron Length:
3136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TATTTAATAATA
Flanking Amino Acid:
EVYTGANGILKKVKKGSLLI
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
85.3
31.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
78.2
0.63
0.8
70.8
39.2
Minor 5ss
39.9
-1.1
3.4
58
40.7
Minor BPS
54.4
0.14
1.8
70.56
35.1

Associated Gene:

Gene:
HIBADH
Ensembl Gene ID:
ENSAPLG00000010878
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011338
35133206 - 35214637
81432