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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_35208186_35214573_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35208186 - 35214573
Intron Length:
6388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGAAATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTGTTTTGAAAT
Flanking Amino Acid:
GWRRWHGRVMVCSRAMASKT
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
70.9
37.8
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
66.1
0.36
1.1
64.6
44.9
Minor 5ss
33.1
-1.9
3.1
36.3
40.5
Minor BPS
61
0.42
1.5
77.49
39

Associated Gene:

Gene:
HIBADH
Ensembl Gene ID:
ENSAPLG00000010878
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011338
35133206 - 35214637
81432