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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_35260793_35260929_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35260793 - 35260929
Intron Length:
137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTAGT
5'SS Class:
major
3'SS Sequence:
GCTTATTTCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATTTGCTTATTT
Flanking Amino Acid:
KAIAKETELDSMKDKLKKVM
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
76.3
38.9
Major BPS
80
0.75
1
78.6
31
Major PPT
74.9
0.56
0.8
73
37
Minor 5ss
43.6
-0.7
2.6
60.7
43.6
Minor BPS
61.2
0.43
2
82.08
39.9

Associated Gene:

Gene:
TAX1BP1
Ensembl Gene ID:
ENSAPLG00000010659
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029483
35229261 - 35285344
56084
ENSAPLT00000029111
35232077 - 35285778
53702
ENSAPLT00000023603
35229261 - 35285344
56084
ENSAPLT00000044573
35229261 - 35285559
56299
ENSAPLT00000011152
35224244 - 35285344
61101
ENSAPLT00000032905
35229261 - 35285559
56299