Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_35261021_35262539_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

35261021 - 35262539

Intron Length:

1519

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTTTA

5'SS Class:

strong_major

3'SS Sequence:

AGCATCATTACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAG

U12 Branch Point Sequence:

CATTTTTTAGCA

Flanking Amino Acid:

TEKDEKELYKIHLKNTEIEN

Intron Amino Acid Position:

290

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

1.1

84.1

30.2

Major BPS

72.5

0.56

1.5

71.7

44.6

Major PPT

67.2

0.39

58.4

41.3

Minor 5ss

49.3

-0

2.5

67.2

43.9

Minor BPS

60.3

0.32

1.6

67.62

39.2

Associated Gene:

Gene:

TAX1BP1

Ensembl Gene ID:

ENSAPLG00000010659

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011152

35224244 - 35285344

61101

ENSAPLT00000044573

35229261 - 35285559

56299

ENSAPLT00000032905

35229261 - 35285559

56299

ENSAPLT00000029111

35232077 - 35285778

53702

ENSAPLT00000023603

35229261 - 35285344

56084