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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_35265607_35266864_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35265607 - 35266864
Intron Length:
1258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TCTTTTCACCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCTTTTCACC
Flanking Amino Acid:
KQVNKFTEQAKIAGSQQKLT
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
100
1.24
0.5
100
0
Major PPT
68.5
0.42
1.1
68.3
36.9
Minor 5ss
37.3
-1.4
2.7
48
41.7
Minor BPS
61.4
0.34
1.7
74.92
35.8

Associated Gene:

Gene:
TAX1BP1
Ensembl Gene ID:
ENSAPLG00000010659
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011152
35224244 - 35285344
61101
ENSAPLT00000044573
35229261 - 35285559
56299
ENSAPLT00000032905
35229261 - 35285559
56299
ENSAPLT00000029483
35229261 - 35285344
56084
ENSAPLT00000029111
35232077 - 35285778
53702