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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_35265607_35269704_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35265607 - 35269704
Intron Length:
4098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TGAACCACTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTAAT
U12 Branch Point Sequence:
AAATGCTTAATG
Flanking Amino Acid:
KQVNKFTEQAGEKMKCSVYA
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
69.2
0.48
1.3
71.9
41
Major PPT
60.1
0.23
1
51.9
37.7
Minor 5ss
37.3
-1.4
2.7
48
41.7
Minor BPS
57.8
0.11
1.8
59.95
41.9

Associated Gene:

Gene:
TAX1BP1
Ensembl Gene ID:
ENSAPLG00000010659
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023603
35229261 - 35285344
56084