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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_35269831_35271787_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35269831 - 35271787
Intron Length:
1957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
GATTTTCATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTAAACTGAATC
Flanking Amino Acid:
QLAAKEDQYKVQLAEKERRI
Intron Amino Acid Position:
590

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
86.8
22.8
Major BPS
100
1.24
0.5
100
0
Major PPT
72
0.5
0.9
66.5
39.6
Minor 5ss
43.6
-0.7
2.9
58.5
40.4
Minor BPS
49.4
-0
1.7
59.42
38.8

Associated Gene:

Gene:
TAX1BP1
Ensembl Gene ID:
ENSAPLG00000010659
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029483
35229261 - 35285344
56084
ENSAPLT00000029111
35232077 - 35285778
53702
ENSAPLT00000023603
35229261 - 35285344
56084
ENSAPLT00000011152
35224244 - 35285344
61101
ENSAPLT00000044573
35229261 - 35285559
56299