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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_35271860_35276361_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35271860 - 35276361
Intron Length:
4502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTCA
5'SS Class:
major
3'SS Sequence:
TTGTATTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACATTTTAAACT
Flanking Amino Acid:
SQLELFTSEKELGRTPGNQA
Intron Amino Acid Position:
614

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
63.8
36.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.5
0.57
0.9
74.5
40.1
Minor 5ss
43.2
-0.7
3
57
47.2
Minor BPS
57.1
0.3
1.6
70.07
41.4

Associated Gene:

Gene:
TAX1BP1
Ensembl Gene ID:
ENSAPLG00000010659
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029111
35232077 - 35285778
53702
ENSAPLT00000023603
35229261 - 35285344
56084
ENSAPLT00000011152
35224244 - 35285344
61101
ENSAPLT00000044573
35229261 - 35285559
56299
ENSAPLT00000029483
35229261 - 35285344
56084