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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_35276537_35276861_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35276537 - 35276861
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
AATTTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TACTACTGAACA
Flanking Amino Acid:
GNPYAIQERRDGADGAFNPD
Intron Amino Acid Position:
672

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.4
1.12
0.6
90.5
20.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
84.6
0.78
0.8
82.1
34.7
Minor 5ss
36
-1.6
2.7
44.9
43.2
Minor BPS
61.7
0.36
1.7
70.91
40.6

Associated Gene:

Gene:
TAX1BP1
Ensembl Gene ID:
ENSAPLG00000010659
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029483
35229261 - 35285344
56084
ENSAPLT00000029111
35232077 - 35285778
53702
ENSAPLT00000023603
35229261 - 35285344
56084
ENSAPLT00000044573
35229261 - 35285559
56299
ENSAPLT00000011152
35224244 - 35285344
61101
ENSAPLT00000032905
35229261 - 35285559
56299