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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_35277011_35284389_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35277011 - 35284389
Intron Length:
7379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
GTTTTTTTAACA
Flanking Amino Acid:
DGLEDPEDSNDDDNTVPSAP
Intron Amino Acid Position:
722

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.3
25.5
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
84.3
0.77
0.9
81
35.4
Minor 5ss
41.9
-0.9
2.8
53.7
43.8
Minor BPS
80.4
0.95
1
83.49
30.3

Associated Gene:

Gene:
TAX1BP1
Ensembl Gene ID:
ENSAPLG00000010659
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044573
35229261 - 35285559
56299
ENSAPLT00000023603
35229261 - 35285344
56084
ENSAPLT00000032905
35229261 - 35285559
56299
ENSAPLT00000011152
35224244 - 35285344
61101
ENSAPLT00000029483
35229261 - 35285344
56084
ENSAPLT00000029111
35232077 - 35285778
53702