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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_35285218_35285284_F

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
35285218 - 35285284
Intron Length:
67

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGA|GCACGTGGA
5'SS Class:
major
3'SS Sequence:
TGACTACGACCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
TCCCGCCTGACT
Flanking Amino Acid:
PPNYDQSKFEDRALRGTSRR
Intron Amino Acid Position:
775

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62
0.28
1.3
60.8
40.6
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
56.7
0.15
1.1
48.6
43.8
Minor 5ss
21.9
-3.2
4
26.7
38
Minor BPS
46.5
-0.1
2.1
65.33
45.3

Associated Gene:

Gene:
TAX1BP1
Ensembl Gene ID:
ENSAPLG00000010659
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029111
35232077 - 35285778
53702