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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_35289718_35296195_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35289718 - 35296195
Intron Length:
6478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCGCTCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
CGACCACTAACG
Flanking Amino Acid:
PVPGCKKRYKNVNGIKYHAK
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.9
81.8
38.5
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
78.2
0.64
0.8
72.7
32.1
Minor 5ss
41.1
-1
2.9
57.9
46.4
Minor BPS
45
-0.5
2
49.09
43.5

Associated Gene:

Gene:
JAZF1
Ensembl Gene ID:
ENSAPLG00000014482
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041646
35289541 - 35383420
93880
ENSAPLT00000020354
35288546 - 35372384
83839
ENSAPLT00000015089
35289541 - 35319234
29694