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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_35296366_35316531_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35296366 - 35316531
Intron Length:
20166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
CCTGCTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TTATCCTTATCT
Flanking Amino Acid:
SSSFRSSTPTGSEYDEEEVD
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
87.1
30
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
76.8
0.6
0.8
68.7
37.2
Minor 5ss
43
-0.8
2.9
57.2
47.1
Minor BPS
79.8
1.01
1.5
93.17
35

Associated Gene:

Gene:
JAZF1
Ensembl Gene ID:
ENSAPLG00000014482
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020354
35288546 - 35372384
83839
ENSAPLT00000015089
35289541 - 35319234
29694
ENSAPLT00000041646
35289541 - 35383420
93880