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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_35316729_35319109_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35316729 - 35319109
Intron Length:
2381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGTGC
5'SS Class:
major
3'SS Sequence:
GTCCTTGTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
ATCCTCATGATT
Flanking Amino Acid:
VTQQAIWPHSRFMTDAARRE
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.1
58.1
42.1
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
73.1
0.52
0.9
65
41.2
Minor 5ss
35
-1.7
3.6
49.7
46.9
Minor BPS
49.5
0.04
1.6
67.12
37.7

Associated Gene:

Gene:
JAZF1
Ensembl Gene ID:
ENSAPLG00000014482
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015089
35289541 - 35319234
29694