Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_35316729_35372187_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

35316729 - 35372187

Intron Length:

55459

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

GTCCTTGTTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTCAT

U12 Branch Point Sequence:

ATCCTCATGATT

Flanking Amino Acid:

PTYVALSYINRFMTDAARRE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.08

0.7

85.2

32.2

Major BPS

82.3

0.8

0.9

81.8

30.8

Major PPT

73.1

0.52

0.9

41.2

Minor 5ss

36.3

-1.6

3.3

48.7

47.5

Minor BPS

49.5

0.04

1.6

67.12

37.7

Associated Gene:

Gene:

JAZF1

Ensembl Gene ID:

ENSAPLG00000014482

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041646

35289541 - 35383420

93880

ENSAPLT00000020354

35288546 - 35372384

83839