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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_35372261_35383308_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35372261 - 35383308
Intron Length:
11048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGCTCC
5'SS Class:
major
3'SS Sequence:
TTTTTAATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
RGGPVLEHGTDTDPRVLEKQ
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.2
67.9
38.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86.9
0.83
0.8
78.9
38.5
Minor 5ss
41.5
-0.9
2.7
52.1
44.6
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
JAZF1
Ensembl Gene ID:
ENSAPLG00000014482
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041646
35289541 - 35383420
93880