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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3548529_3581529_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3548529 - 3581529
Intron Length:
33001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCACTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TCTTCTTTCACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
71.5
38.5
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
83.7
0.76
0.8
78.3
28.9
Minor 5ss
35.6
-1.6
2.9
43.1
37.8
Minor BPS
72.5
0.79
1.7
87.23
39

Associated Gene:

Gene:
ADCYAP1R1
Ensembl Gene ID:
ENSAPLG00000009120
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032738
3445732 - 3581832
136101
ENSAPLT00000009591
3445732 - 3581832
136101
ENSAPLT00000045110
3445732 - 3581832
136101
ENSAPLT00000041706
3445732 - 3581832
136101