About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_35515173_35515247_F


Intron Information:

Intron Rank:
129487

Intron Class:
major

Intron Phase:

Intron Coordinates:
35515173 - 35515247

Intron Length:
75

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAA|GTAAGACAC

5'SS Class:
major

3'SS Sequence:
TGGAATTTTTTAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTGAC

U12 Branch Point Sequence:
GAGTTTTTGACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
79.5
0.7
1
68.8
36.3

Major BPS
86.5
0.91
0.8
77.4
37.4

Major PPT
69.6
0.44
1
66.2
44.8

Minor 5ss
34
-1.8
3.1
43.1
38

Minor BPS
63.9
0.52
1.2
71.71
39.6

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

35514682 - 35528951
14270

35514682 - 35516487
1806