About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_35515391_35516318_F

Intron Information:

Intron Rank:
129488
Intron Class:
major
Intron Phase:
Intron Coordinates:
35515391 - 35516318
Intron Length:
928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TATCTGTCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
87.3
27
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.4
0.57
0.9
69.4
36.6
Minor 5ss
42.7
-0.8
2.8
59.4
38.1
Minor BPS
68.4
0.66
1.7
88.82
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019656
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017825
35514682 - 35516487
1806