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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_35584806_35587946_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35584806 - 35587946
Intron Length:
3141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGCCTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
GTTTGCCTGACA
Flanking Amino Acid:
FVCSAPGCSQRFPTEDHLMI
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
70.8
0.47
1.1
65.3
41.2
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
53.5
0.1
2.1
72.29
39.4

Associated Gene:

Gene:
CREB5
Ensembl Gene ID:
ENSAPLG00000004960
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005119
35584734 - 35794277
209544