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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_35588041_35596926_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35588041 - 35596926
Intron Length:
8886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCATATTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCTTTTCATA
Flanking Amino Acid:
PSIKTDNMLSDQTPTPTRFL
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.8
33.7
Major BPS
100
1.24
0.5
100
0
Major PPT
79.3
0.66
0.8
77.1
36
Minor 5ss
32.8
-2
2.9
40.7
45.1
Minor BPS
57
0.21
1.7
71.66
34.9

Associated Gene:

Gene:
CREB5
Ensembl Gene ID:
ENSAPLG00000004960
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005119
35584734 - 35794277
209544