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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_35597049_35626633_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35597049 - 35626633
Intron Length:
29585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTTCCTTTCACA
Flanking Amino Acid:
KAQEEENNKRNISMHNTVGG
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
81.3
32.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.9
0.76
0.7
79
26.6
Minor 5ss
32.7
-2
3.4
40.8
45.4
Minor BPS
61.3
0.35
1.8
72.26
40.2

Associated Gene:

Gene:
CREB5
Ensembl Gene ID:
ENSAPLG00000004960
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005119
35584734 - 35794277
209544