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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_35626807_35727209_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35626807 - 35727209
Intron Length:
100403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGACAA
U12 Branch Point Sequence:
AAGCCCATGACA
Flanking Amino Acid:
TQAPSTNRQIGPVPGSLSSL
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
1
71.6
40.2
Major BPS
49.8
-0
1.1
58.8
38.1
Major PPT
76.6
0.6
0.7
69.3
31.3
Minor 5ss
34.1
-1.8
2.8
34.5
41
Minor BPS
51.9
0.05
1.6
60.49
38.7

Associated Gene:

Gene:
CREB5
Ensembl Gene ID:
ENSAPLG00000004960
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005119
35584734 - 35794277
209544