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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_35999970_36015802_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35999970 - 36015802
Intron Length:
15833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTAGA
5'SS Class:
major
3'SS Sequence:
ACTTCTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CCCTTTTTACTT
Flanking Amino Acid:
MKAFGWRVADAEEYQPPIW
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
70.7
41.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
80.1
0.68
0.9
76.9
36.6
Minor 5ss
33.8
-1.8
3
39
41.4
Minor BPS
50
0.08
1.6
61.64
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004770
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004928
35999942 - 36111027
111086