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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36015842_36022478_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36015842 - 36022478
Intron Length:
6637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TTGTCTTTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTGTCTTTGACA
Flanking Amino Acid:
EYQPPIWKSYLYQLQQEAPR
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
77.9
31.1
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
78.8
0.65
1
76
38
Minor 5ss
36.4
-1.5
2.9
48.3
41.8
Minor BPS
78.7
0.9
1.1
81.99
33.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004770
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044574
35949884 - 36111027
161144
ENSAPLT00000032394
35949884 - 36063128
113245
ENSAPLT00000004928
35999942 - 36111027
111086
ENSAPLT00000045303
35879485 - 36111027
231543