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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36022535_36038732_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36022535 - 36038732
Intron Length:
16198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCAAAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TTTTCTTTCAAA
Flanking Amino Acid:
RPKRIICPREVENRPKYYGR
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1.2
75.8
35
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
67.6
0.4
1
64.8
40.3
Minor 5ss
36.9
-1.5
2.7
45.6
42.5
Minor BPS
65.4
0.48
1.8
80.33
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004770
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032394
35949884 - 36063128
113245
ENSAPLT00000004928
35999942 - 36111027
111086
ENSAPLT00000045303
35879485 - 36111027
231543
ENSAPLT00000044574
35949884 - 36111027
161144